A lot of minor changes

documents/Documents/latex/tikzit_styles.tikzstyles

@@ -18,6 +18,9 @@
 \tikzstyle{outerbox6x17}=[fill=white, draw=black, shape=rectangle, fill opacity=0, rounded corners, minimum width=17cm, minimum height=6cm]
 \tikzstyle{outerbox}=[fill=white, draw=black, shape=rectangle, rounded corners, fill opacity=0, minimum width=14cm, minimum height=5cm]
 \tikzstyle{outerbox8x4}=[fill=white, draw=black, shape=rectangle, rounded corners, fill opacity=0, minimum height=8cm, minimum width=8cm]
+\tikzstyle{outerfram5x7}=[fill=white, draw=black, shape=rectangle, rounded corners, fill opacity=0, minimum height=4cm, minimum width=11.5cm]
+\tikzstyle{trapezium}=[fill=white, draw=black, shape=trapezium, shape border rotate=90, inner ysep=1pt, trapezium angle=75, rounded corners=.85mm, align=center]
+\tikzstyle{invtrapezium}=[fill=white, draw=black, shape=trapezium, shape border rotate=270, inner ysep=1pt, trapezium angle=75, rounded corners=.85mm, align=center]
 
 % Edge styles
 \tikzstyle{new edge style 0}=[->, draw={rgb,255: red,127; green,129; blue,131}, line width=0.6mm]

documents/Documents/markdown/templates/jdf.rmd

@@ -0,0 +1,20 @@
+---
+title: |
+    | <++>
+    | <++>
+author: '<++>'
+email: '<++>'
+abstract: |
+    <++>
+bibliography: /home/micah/Documents/latex/bibliography.bib
+link-citations: yes
+output:
+    pdf_document:
+        pandoc_args: ["--filter", "pandoc-crossref"]
+        template: /home/micah/Documents/markdown/jdf-template.pandoc
+        fig_caption: true
+        citation_package: biblatex
+        keep_tex: true
+---
+
+<++>

etc/sudoers.d/micahprivs

@@ -1,4 +1 @@
-Defaults lecture_file="/etc/sudoers.lecture"
-Defaults lecture="always"
-
-micah ALL= NOPASSWD:/bin/mount,/bin/umount,/bin/mkdir,/usr/bin/openvpn,/usr/bin/openconnect,/usr/bin/light
+micah ALL= NOPASSWD:/bin/mount,/bin/umount,/bin/mkdir,/usr/bin/openvpn,/usr/bin/openconnect,/usr/bin/light,/usr/bin/systemctl start i3lock@micah, /usr/bin/systemctl stop i3lock@micah, /usr/bin/systemctl restart i3lock@micah

etc/sudoers.lecture

@@ -1 +0,0 @@
-Activate Yubikey or provide password to continue...

etc/systemd/system/i3lock@.service

@@ -0,0 +1,10 @@
+[Unit]
+Description=i3lock
+
+[Service]
+User=%I
+Type=forking
+Environment=DISPLAY=:0
+ExecStart=/home/micah/.local/bin/i3lock
+ExecStartPre=/usr/bin/killall -SIGUSR1 dunst
+ExecStopPost=/usr/bin/killall -SIGUSR2 dunst

etc/udev/rules.d/yubikey.rules

@@ -0,0 +1,2 @@
+ACTION=="remove", ENV{DEVTYPE}=="usb_device", ENV{PRODUCT}=="1050/407*", ENV{DISPLAY}=":0", ENV{XAUTHORITY}="/run/user/1000/Xauthority", RUN+="/usr/bin/systemctl start --no-block i3lock@micah.service"
+ACTION=="add", ENV{DEVTYPE}=="usb_device", ENV{ID_BUS}=="usb", ENV{PRODUCT}=="1050/407*", RUN+="/home/micah/.local/bin/authcheck /usr/bin/systemctl stop i3lock@micah.service"

git/.config/git/gitignore_global

@@ -1,2 +1,4 @@
+root
 env
 my_sandbox
+.vscode

i3/.config/i3/config

@@ -184,7 +184,7 @@ bindsym $mod+Shift+e         exec --no-startup-id bemenulatex --type
 bindsym $mod+Control+e       exec --no-startup-id bemenuunicode
 bindsym $mod+Shift+Control+e exec --no-startup-id bemenulatex
 
-bindsym $mod+r               exec --no-startup-id i3-cliprog files "$FILE"
+bindsym $mod+r               exec --no-startup-id i3-cliprog files "TERM=xterm $FILE"
 bindsym $mod+Shift+r         exec --no-startup-id i3-cliprog math "R -q --no-save"
 #bindsym $mod+Control+r
 #bindsym $mod+Shift+Control+r
@@ -465,10 +465,10 @@ bindsym $mod+Scroll_Lock                exec --no-startup-id lock
 bindsym $mod+Home                       exec --no-startup-id toggleservice micahvpn
 #bindsym $mod+Shift+Home
 #
-bindsym $mod+Insert                     exec --no-startup-id bash screencast
+#bindsym $mod+Insert
 #bindsym $mod+Shift+Insert
 
-bindsym $mod+Delete                     exec --no-startup-id killall ffmpeg & killall screenkey
+bindsym $mod+Delete                     exec --no-startup-id lock
 #bindsym $mod+Shift+Delete
 
 #bindsym $mod+Prior

isync/.config/isync/mbsyncrc

@@ -1,7 +1,7 @@
 IMAPAccount gmail
 Host imap.gmail.com
 User mhalter3378@gmail.com
-PassCmd "gopass offlineimap/gmail"
+PassCmd "gopass show offlineimap/gmail"
 AuthMechs LOGIN
 SSLType IMAPS
 CertificateFile /etc/ssl/certs/ca-certificates.crt
@@ -24,7 +24,7 @@ SyncState *
 IMAPAccount gatech
 Host outlook.office365.com
 User mhalter3@gatech.edu
-PassCmd "gopass offlineimap/gatech"
+PassCmd "gopass show offlineimap/gatech"
 SSLType IMAPS
 CertificateFile /etc/ssl/certs/ca-certificates.crt
 

khard/.config/khard/khard.conf

@@ -3,7 +3,7 @@
 
 [addressbooks]
 [[Contacts]]
-path = ~/.local/share/Contacts/mehalter/contacts
+path = $XDG_DATA_HOME/Contacts/mehalter/contacts
 
 [general]
 debug = no

kitty/.config/kitty/kitty.conf

@@ -1218,7 +1218,7 @@ map kitty_mod+backspace change_font_size all 0
 #: screen contents into the scrollback buffer and clear the screen,
 #: instead of just clearing the screen::
 
-map ctrl+l combine : clear_terminal scroll active : send_text normal,application \x0c
+# map ctrl+l combine : clear_terminal scroll active : send_text normal,application \x0c
 
 
 #: You can tell kitty to send arbitrary (UTF-8) encoded text to the

msmtp/.config/msmtp/config

@@ -11,7 +11,7 @@ logfile ~/.logs/msmtp.log
 account gmail
 from micah@mehalter.com
 user mhalter3378@gmail.com
-passwordeval "gopass offlineimap/gmail"
+passwordeval "gopass show offlineimap/gmail"
 host smtp.gmail.com
 port 587
 
@@ -19,6 +19,6 @@ port 587
 account gatech
 from mehalter@gatech.edu
 user mhalter3@gatech.edu
-passwordeval "gopass offlineimap/gatech"
+passwordeval "gopass show offlineimap/gatech"
 host outlook.office365.com
 port 587

mutt/.config/mutt/mailcap

@@ -1,6 +1,7 @@
 text/plain; $EDITOR %s ;
 text/html; tmpopen %s ; nametemplate=%s.html
 text/html; w3m -I %{charset} -T text/html; copiousoutput;
+text/calendar; calview.rb '%s'; copiousoutput;
 image/*; tmpopen %s ; copiousoutput
 video/*; setsid mpv --quiet %s &; copiousoutput
 application/pdf; tmpopen %s ;

mutt/.config/mutt/muttrc

@@ -43,7 +43,8 @@ unset move
 unset confirmappend
 unset help
 auto_view text/html
-alternative_order text/plain text/enriched text/html
+auto_view text/calendar
+alternative_order text/calendar text/plain text/enriched text/html
 
 # Vim Bindings
 bind index g noop
@@ -89,10 +90,10 @@ source $XDG_CONFIG_HOME/mutt/muttcol
 
 # PGP
 set pgp_use_gpg_agent
-set pgp_replyencrypt
-set pgp_replysign
-set pgp_replysignencrypted
-set pgp_verify_sig=yes
+set crypt_replyencrypt
+set crypt_replysign
+set crypt_replysignencrypted
+set crypt_verify_sig=yes
 set pgp_show_unusable = no
 set pgp_sign_as="0xBEB8056E542A33EB8A4B081F723F998E98D93D50"
 

neovim/.config/nvim/coc-settings.json

@@ -1,25 +1,3 @@
 {
-  "languageserver": {
-    "haskell": {
-      "command": "hie-wrapper",
-      "args": ["--lsp"],
-      "rootPatterns": [
-        "*.cabal",
-        "stack.yaml",
-        "cabal.project",
-        "package.yaml"
-      ],
-      "filetypes": [
-        "hs",
-        "lhs",
-        "haskell"
-      ],
-      "initializationOptions": {
-        "languageServerHaskell": {
-          "hlintOn": true
-        }
-      }
-    }
-  },
   "python.formatting.provider": "black"
 }

neovim/.config/nvim/init.vim

@@ -183,6 +183,7 @@ nnoremap <silent> <leader>z :Goyo<CR>
 " vimtex
 let g:vimtex_view_method='zathura'
 let g:vimtex_compiler_progname='nvr'
+let g:tex_flavor='latex'
 
 " table-mode
 let g:table_mode_corner='|'
@@ -328,6 +329,9 @@ autocmd Filetype python,julia,hy vmap <buffer> <silent> <leader>e :FloatermSend!
 map 0 ^
 map <leader>pp :setlocal paste!<CR>
 
+"" bibliography generation
+map <leader>gb :read !getbib -c<CR>
+
 "" Defining guides
 inoremap ,, <esc>/<++><CR>"_c4l
 vnoremap <leader><leader> <esc>/<++><CR>"_c4l
@@ -351,7 +355,7 @@ inoremap <C-Space> <C-n>
 inoremap <S-Tab> <C-V><Tab>
 
 " auto closing tags
-inoremap </ </<C-x><C-o><C-n><CR>
+" inoremap </ </<C-x><C-o><C-n><CR>
 
 " disable highlight
 map <silent> <CR> :set hlsearch!<CR>

newsboat/.config/newsboat/urls

@@ -10,3 +10,4 @@ http://www.businessinsider.com/rss
 https://www.engadget.com/rss.xml
 https://kotaku.com/rss
 https://www.androidauthority.com/feed/
+https://www.algebraicjulia.org/blog/feed.xml

picom/.config/systemd/user/picom.service

@@ -3,7 +3,7 @@ Description=picom
 
 [Service]
 Type=simple
-ExecStart=picom
+ExecStart=picom --experimental-backend
 
 [Install]
 WantedBy=default.target

ranger/.config/ranger/rc.conf

@@ -13,7 +13,7 @@ set vcs_backend_git enabled
 set vcs_backend_hg disabled
 set vcs_backend_bzr disabled
 set preview_images true
-set preview_images_method kitty
+set preview_images_method ueberzug
 set unicode_ellipsis false
 set show_hidden_bookmarks true
 set colorscheme default

scripts/.local/bin/authcheck

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+echo "" | pamtester system-auth micah authenticate && $@

scripts/.local/bin/calview.rb

@@ -0,0 +1,88 @@
+#!/usr/bin/env ruby
+
+# This is a simple script that takes vcal attachments and displays them in
+# pure text. This is suitable for displaying callendar invitations in mutt.
+# 
+# Add this to your to your .mailcap:
+# text/calendar; /<pathto>/calview.rb '%s'; copiousoutput
+#
+# Created by Geir Isene <g@isene.com> in 2020 and released into Public Domain.
+
+class String
+  def colorize(color_code) # This is for general terminal output - doesn't work inside mutt
+    "\e[#{color_code}m#{self}\e[0m"
+  end
+
+  def red
+    colorize(31)
+  end
+  def green
+    colorize(32)
+  end
+  def yellow
+    colorize(33)
+  end
+  def blue
+    colorize(34)
+  end
+end
+
+vcal  = ARGF.read
+
+# Get dates and times
+if vcal.match( /^DTSTART;TZID=/ )
+  sdate = vcal[ /^DTSTART;TZID=.*:(.*)T/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  edate = vcal[ /^DTEND;TZID=.*:(.*)T/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  stime = vcal[ /^DTSTART;TZID=.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+  etime = vcal[ /^DTEND;TZID=.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+elsif vcal.match( /DTSTART;VALUE=DATE:/ )
+  sdate = vcal[ /^DTSTART;VALUE=DATE:(.*)/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  edate = vcal[ /^DTEND;VALUE=DATE:(.*)/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  stime = vcal[ /^DTSTART.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+  begin
+    etime = vcal[ /^DTEND.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+  rescue
+    etime = stime
+  end
+else
+  sdate = vcal[ /^DTSTART:(.*)T/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  edate = vcal[ /^DTEND:(.*)T/, 1 ].sub( /(\d\d\d\d)(\d\d)(\d\d)/, '\1-\2-\3') 
+  stime = vcal[ /^DTSTART.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+  etime = vcal[ /^DTEND.*T(\d\d\d\d)/, 1 ].sub( /(\d\d)(\d\d)/, '\1:\2')
+end
+
+# Get organizer
+if vcal.match( /^ORGANIZER;CN=/ )
+  org   = vcal[ /^ORGANIZER;CN=(.*)/, 1 ].sub( /:mailto:/i, ' <') + ">"
+else
+  org   = vcal[ /^ORGANIZER:(.*)/, 1 ].sub( /MAILTO:/i, ' <') + ">"
+end
+
+# Get description
+if vcal.match( /^DESCRIPTION;.*?:(.*)^UID/m )
+  desc  = vcal[ /^DESCRIPTION;.*?:(.*)^UID/m, 1 ].gsub( /\n /, '' ).gsub( /\\n/, "\n" ).gsub( /\n\n+/, "\n" ).gsub( / \| /, "\n" ).sub( /^\n/, '' )
+else
+  begin
+    desc  = vcal[ /^DESCRIPTION:(.*)^SUMMARY/m, 1 ].gsub( /\n /, '' ).gsub( /\\n/, "\n" ).gsub( /\n\n+/, "\n" ).gsub( / \| /, "\n" ).sub( /^\n/, '' )
+  rescue
+    desc  = ""
+  end
+end
+
+sdate == edate ? dates = sdate : dates = sdate + " - " + edate
+stime == etime ? times = stime : times = stime + " - " + etime
+# Get participants
+part  = vcal.scan( /^ATTENDEE.*CN=([\s\S]*?@.*)\n/ ).join('%').gsub( /\n /, '').gsub( /%/, ">\n   " ).gsub( /:mailto:/i, " <" )
+part  = "   " + part + ">" if part != ""
+# Get summary and description
+sum   = vcal[ /^SUMMARY;.*:(.*)/, 1 ]
+sum   = vcal[ /^SUMMARY:(.*)/, 1 ] if sum == nil
+
+# Print the result in a tidy fashion
+puts "WHAT: " + (sum).yellow
+puts "WHEN: " + (dates + ", " + times).green
+puts ""
+puts "ORGANIZER: " + org
+puts "PARTICIPANTS:", part
+puts ""
+puts "DESCRIPTION:", desc

scripts/.local/bin/compiler

@@ -21,13 +21,13 @@ pdfpcCleanup() {
 }
 
 case "$file" in
-  *\.uml|*\.pu) plantuml "$file" ;;
+  *\.uml|*\.pu|*\.puml) plantuml "$file" ;;
   *\.gv|*\.dot) dot -Tpng "$file" -o "$base".png ;;
   *\.ms) refer -PS -e "$file" | groff -me -ms -kejpt -T pdf > "$base".pdf ;;
   *\.mom) refer -PS -e "$file" | groff -mom -kejpt -T pdf > "$base".pdf ;;
   *\.rmd) echo "require(rmarkdown);rmarkdown::render('$file', quiet=TRUE)" | R -q --vanilla && pdfpcCleanup ;;
   *\.tex) latexmk -synctex=1 --pdf "$file" && [ -e "$base".pdfpc ] && pdfpcCleanup ;;
-  *\.md) if [ -e "$base"_template.tex ] ; then pandoc --template "$base"_template.tex "$file" --filter pandoc-citeproc --variable urlcolor=blue -o "$base".pdf; else  pandoc "$file" --filter pandoc-citeproc --variable urlcolor=blue -o "$base".pdf; fi ;;
+  *\.md) if [ -e "$base"_template.tex ] ; then pandoc --template "$base"_template.tex "$file" --filter pandoc-crossref --citeproc --variable urlcolor=blue -o "$base".pdf; else  pandoc "$file" --filter pandoc-crossref --citeproc --variable urlcolor=blue -o "$base".pdf; fi ;;
   *config.h) make && sudo make install ;;
   *\.c) gcc "$file" -o "$base" && "$base" ;;
   *\.py) python "$file" ;;

scripts/.local/bin/getbib

@@ -6,6 +6,8 @@ if [ -f "$1" ]; then
   doi=$(pdfinfo "$1" | grep -io "doi:.*") ||
   doi=$(pdftotext "$1" 2>/dev/null - | grep -io "doi:.*" -m 1) ||
   exit 1
+elif [ "$1" = "-c" ]; then
+  doi=$(xclip -o -selection clipboard)
 else
   doi="$1"
 fi

scripts/.local/bin/gohome

@@ -1,6 +1,6 @@
 #!/bin/env sh
 
-gopass OpenVpn/micah | sudo openvpn --config "$XDG_CONFIG_HOME"/openvpn/mhalter3-gtri.ovpn --askpass /dev/stdin --script-security 2 \
+gopass show OpenVpn/micah | sudo openvpn --config "$XDG_CONFIG_HOME"/openvpn/mhalter3-gtri.ovpn --askpass /dev/stdin --script-security 2 \
   --setenv PATH '/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin' \
   --up /etc/openvpn/scripts/update-systemd-resolved \
   --down /etc/openvpn/scripts/update-systemd-resolved \

scripts/.local/bin/i3lock

@@ -0,0 +1,23 @@
+#!/bin/env bash
+
+. "/home/micah/.cache/wal/colors.sh"
+
+i3lock -B 8 \
+  --radius=110 --ring-width=5 \
+  --insidecolor="${color0:1:6}ff" --line-uses-inside \
+  --insidevercolor="${color0:1:6}ff" \
+  --insidewrongcolor="${color0:1:6}ff" \
+  --ringcolor="${color7:1:6}ff" \
+  --separatorcolor="${color0:1:6}ff" \
+  --keyhlcolor="${color0:1:6}ff" \
+  --bshlcolor="${color7:1:6}ff" \
+  --ringvercolor="${color7:1:6}ff" \
+  --ringwrongcolor="${color2:1:6}ff" \
+  --timecolor="${color7:1:6}ff" \
+  --time-font="monospace" \
+  --timesize=50 \
+  --timestr="%H:%M" \
+  --timepos="ix:iy+15" \
+  --datestr="" \
+  --clock \
+  --indicator

scripts/.local/bin/lock

@@ -1,33 +1,3 @@
 #!/bin/env bash
 
-pgrep i3lock > /dev/null && exit 0
-
-lock() {
-  . "$XDG_CACHE_HOME/wal/colors.sh"
-
-  killall -SIGUSR1 dunst
-
-   i3lock -n -e -B 8 \
-     --radius=110 --ring-width=5 \
-     --insidecolor="${color0:1:6}ff" --line-uses-inside \
-     --insidevercolor="${color0:1:6}ff" \
-     --insidewrongcolor="${color0:1:6}ff" \
-     --ringcolor="${color7:1:6}ff" \
-     --separatorcolor="${color0:1:6}ff" \
-     --keyhlcolor="${color0:1:6}ff" \
-     --bshlcolor="${color7:1:6}ff" \
-     --ringvercolor="${color7:1:6}ff" \
-     --ringwrongcolor="${color2:1:6}ff" \
-     --timecolor="${color7:1:6}ff" \
-     --time-font="monospace" \
-     --timesize=50 \
-     --timestr="%H:%M" \
-     --timepos="ix:iy+15" \
-     --datestr="" \
-     --clock \
-     --indicator
-
-  killall -SIGUSR2 dunst
-}
-
-lock &
+sudo systemctl start i3lock@micah

scripts/.local/bin/opout

@@ -4,7 +4,7 @@ basename="$(echo "$1" | sed 's/\.[^\/.]*$//')"
 
 case "$1" in
   *.tex|*.md|*.rmd|*.ms|*.me|*.mom) setsid zathura "$basename".pdf >/dev/null 2>&1 & ;;
-  *.gv|*.dot|*.uml|*.pu) setsid sxiveh "$basename".png >/dev/null 2>&1 & ;;
+  *.gv|*.dot|*.uml|*.pu|*.puml) setsid sxiveh "$basename".png >/dev/null 2>&1 & ;;
   *.[0-9]) setsid zathura "$basename".pdf >/dev/null 2>&1 & ;;
   *.html) setsid "$BROWSER" "$basename".html >/dev/null 2>&1 & ;;
   *.py) setsid jupyter qtconsole >/dev/null 2>&1 & ;;

vdirsyncer/.config/vdirsyncer/password.sh

@@ -1,3 +1,3 @@
 #!/bin/sh
 
-gopass vdirsyncer/"$1"
+gopass show vdirsyncer/"$1"

zsh/.config/zsh/.zshrc

@@ -17,7 +17,7 @@ export SPACESHIP_VI_MODE_INSERT='[I]'
 export SPACESHIP_VI_MODE_NORMAL='[N]'
 export SPACESHIP_VI_MODE_SUFFIX=' '
 export SPACESHIP_VI_MODE_COLOR=$SPACESHIP_CHAR_COLOR_SUCCESS
-export SPACESHIP_JULIA_SYMBOL='∴'
+export SPACESHIP_JULIA_SYMBOL='⛬ '
 
 export HISTIGNORE="&:ls:[bf]g:exit:reset:clear:cd:cd ..:cd.."
 export HISTSIZE=25000
@@ -29,6 +29,7 @@ setopt HIST_IGNORE_ALL_DUPS
 setopt HIST_IGNORE_SPACE
 setopt HIST_REDUCE_BLANKS
 setopt HIST_VERIFY
+setopt BASH_REMATCH
 
 setopt INTERACTIVECOMMENTS
 setopt CORRECT
@@ -52,8 +53,14 @@ zle -N zle-keymap-select
 
 bindkey -v
 export KEYTIMEOUT=10
-bindkey -M viins 'fj' vi-cmd-mode
-bindkey -M viins 'jf' vi-cmd-mode
+if [[ $TERM == tmux* ]]; then
+  bindkey '^[[1~' beginning-of-line
+  bindkey '^[[4~' end-of-line
+else
+  bindkey '^[[H' beginning-of-line
+  bindkey '^[[F' end-of-line
+fi
+bindkey '^[[3~' delete-char
 bindkey -M viins '^a' vi-beginning-of-line
 bindkey -M viins '^e' vi-end-of-line
 bindkey -M viins '^k' kill-line
@@ -106,3 +113,6 @@ if [[ "$USER" == "root" ]] && [[ "$DEFAULT_USER" == "micah" ]]; then
   SUFLAGS="-u"
 fi
 compinit -d $XDG_CACHE_HOME/zsh/zcompdump-$ZSH_VERSION $SUFLAGS
+
+# set up x11 server authority
+xhost +local:root > /dev/null

zsh/.config/zsh/aliases

@@ -114,6 +114,16 @@ jt() {
 }
 
 # === Julia Utilities: ===
+
+## Download specified version of julia
+jldl() {
+  if [[ "$1" =~ ^([0-9]+\.[0-9]+)\.[0-9]+$ ]]; then
+    ver="${BASH_REMATCH[1]}"
+    sver="${BASH_REMATCH[2]}"
+    wget "https://julialang-s3.julialang.org/bin/linux/x64/${sver}/julia-${ver}-linux-x86_64.tar.gz" -O - | tar xz -C ${JULIA_HOME}
+  fi
+}
+
 ## Call base julia installations or run virtual environment if activated
 jl() {
   if type julia >/dev/null; then
@@ -220,14 +230,13 @@ jlsys() {
   if [ -f "${VIRTUAL_ENV}/SysImage.so" ]; then
     ver=""
     proj="${VIRTUAL_ENV}"
-    opts="${@}"
+    jl ${ver} -J${proj}/SysImage.so ${@}
   else
     ver="${1}"
     proj="${JULIA_DEPOT_PATH}/environments/v${ver}-SysImage"
     [ ! -f "${proj}/SysImage.so" ] && return 1
-    opts="${@:2}"
+    jl ${ver} -J${proj}/SysImage.so ${@:2}
   fi
-  jl ${ver} -J${proj}/SysImage.so ${opts}
 }
 
 ## Start Julia in the virtual environment project
@@ -235,13 +244,12 @@ jlsysproj() {
   if [ -n "${VIRTUAL_ENV}" ]; then
     ver=""
     proj="${VIRTUAL_ENV}"
-    opts="${@}"
+    jl ${ver} --project=${proj} ${@}
   else
     ver="${1}"
     proj="${JULIA_DEPOT_PATH}/environments/v${ver}-SysImage"
-    opts="${@:2}"
+    jl ${ver} --project=${proj} ${@:2}
   fi
-  jl ${ver} --project=${proj} ${opts}
 }
 
 ## Run jlpkg in the virtual environment project
@@ -257,7 +265,7 @@ jlbuildsysimage() {
     proj="${JULIA_DEPOT_PATH}/environments/v${ver}-SysImage"
     [ ! -f "${proj}/Project.toml" ] && return 1
   fi
-  jlsysproj ${ver} -e "using PackageCompiler, Pkg; create_sysimage([Symbol(k) for k in keys(Pkg.installed())]; sysimage_path=\"${proj}/SysImage.so\")"
+  jlsysproj ${ver} -e "using PackageCompiler, Pkg; create_sysimage([Symbol(x.name) for x in values(Pkg.dependencies()) if x.is_direct_dep]; sysimage_path=\"${proj}/SysImage.so\")"
 }
 
 # git aliases