A julia package for representing and manipulating model semantics
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[WIP] Add a theory for modeling SEIRD diseases w/ primitive transmision model (covid?) (#241) * Add a theory for modeling SEIRD diseases primitive transmision model * update covid example with operadic composition and SEIRD model * Update catlab dependency * Fix typo * Updated dependency versions * Updated catlab syntax and petri net syntax throughout files * Updated packages * attempt to update malaria example. Fixes problems with OpenPetri.model.model * More fixes to malaria.ipynb * fix the mk_function calls in malaria.ipynb * update wd render to orientation from direction. update malaria example * Add some TODOs to the CT api * attempt to use the new CT API for petri composition. * add implementation of Covid model without CT interface. * figured out how to use the new API * introduce PetriCospan instance, tests pass * WIP saving state * fix test failure on Death Sq * fix compose_pushout attempt 1 * remove compose_pushout debug stmts * collecting tests at the bottom of the file * move covid example to bottom of file * remove unnecessarily tight type constraint * add tests for building SEI and SEIR models * comment out drawing to make testing easier * WIP building intercity flow model * add more PetriCospan tests * add covid model and parameter exploration * refactor covid odemodel * move covid images to a `img` folder * ignore images in covid example directory * add SEIRD case for COVID * fix plotting * add peakgap analysis of SEIRD multicity * delete unused test file for catlab * add Pseird city model to covid example * update project.toml and tests * add comments to odemodel.jl * integrate PetriCospans into SemanticModels add tests * ammend previous commit * add estimate delay to odemodel.jl * add SEIR vs SEIRD comparison based on gap * add validation data generation script Co-authored-by: Micah Halter <micah.halter@gtri.gatech.edu>
11 months ago
  1. name = "SemanticModels"
  2. uuid = "f5ac2a72-33c7-5caf-b863-f02fefdcf428"
  3. authors = ["James Fairbanks <james.fairbanks@gtri.gatech.edu>", "Micah Halter <micah.halter@gtri.gatech.edu>"]
  4. version = "0.4.0"
  5. [deps]
  6. Catlab = "134e5e36-593f-5add-ad60-77f754baafbe"
  7. LightGraphs = "093fc24a-ae57-5d10-9952-331d41423f4d"
  8. MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
  9. Petri = "4259d249-1051-49fa-8328-3f8ab9391c33"
  10. [compat]
  11. Catlab = "^0.7.0"
  12. LightGraphs = "^1.3.3"
  13. MacroTools = "^0.5.5"
  14. Petri = "^1.0.0"
  15. julia = "1.0"
  16. [extras]
  17. Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
  18. [targets]
  19. test = ["Test"]